diff --git a/pype/plugins/ftrack/publish/integrate_remove_components.py b/pype/plugins/ftrack/publish/integrate_remove_components.py
index a215ee1b97..bad50f7200 100644
--- a/pype/plugins/ftrack/publish/integrate_remove_components.py
+++ b/pype/plugins/ftrack/publish/integrate_remove_components.py
@@ -17,6 +17,9 @@ class IntegrateCleanComponentData(pyblish.api.InstancePlugin):
 
         for comp in instance.data['representations']:
             self.log.debug('component {}'.format(comp))
+            
+            if "%" in comp['published_path'] or "#" in comp['published_path']:
+                continue
 
             if comp.get('thumbnail') or ("thumbnail" in comp.get('tags', [])):
                 os.remove(comp['published_path'])
diff --git a/pype/plugins/global/publish/integrate_new.py b/pype/plugins/global/publish/integrate_new.py
index 6c89e22a83..61881b2a34 100644
--- a/pype/plugins/global/publish/integrate_new.py
+++ b/pype/plugins/global/publish/integrate_new.py
@@ -307,7 +307,7 @@ class IntegrateAssetNew(pyblish.api.InstancePlugin):
                 if repre.get("frameStart"):
                     frame_start_padding = len(str(
                         repre.get("frameEnd")))
-                    index_frame_start = repre.get("frameStart")
+                    index_frame_start = int(repre.get("frameStart"))
 
                 dst_padding_exp = src_padding_exp
                 for i in src_collection.indexes:
@@ -322,7 +322,7 @@ class IntegrateAssetNew(pyblish.api.InstancePlugin):
                         dst_padding = dst_padding_exp % index_frame_start
                         index_frame_start += 1
 
-                    dst = "{0}{1}{2}".format(dst_head, dst_padding, dst_tail)
+                    dst = "{0}{1}{2}".format(dst_head, dst_padding, dst_tail).replace("..", ".")
                     self.log.debug("destination: `{}`".format(dst))
                     src = os.path.join(stagingdir, src_file_name)
                     self.log.debug("source: {}".format(src))
@@ -357,7 +357,7 @@ class IntegrateAssetNew(pyblish.api.InstancePlugin):
                 src = os.path.join(stagingdir, fname)
                 anatomy_filled = anatomy.format(template_data)
                 dst = os.path.normpath(
-                    anatomy_filled[template_name]["path"])
+                    anatomy_filled[template_name]["path"]).replace("..", ".")
 
                 instance.data["transfers"].append([src, dst])