diff --git a/tests/integration/hosts/aftereffects/lib.py b/tests/integration/hosts/aftereffects/lib.py
index 541103cb2e..3fb1fa18ce 100644
--- a/tests/integration/hosts/aftereffects/lib.py
+++ b/tests/integration/hosts/aftereffects/lib.py
@@ -37,6 +37,11 @@ class AEHostFixtures(HostFixtures):
         """Points Maya to userSetup file from input data"""
         pass
 
+    @pytest.fixture(scope="module")
+    def skip_compare_folders(self):
+        # skip folder that contain "Logs", these come only from Deadline
+        return ["Logs"]
+
 
 class AELocalPublishTestClass(AEHostFixtures, PublishTest):
     """Testing class for local publishes."""
diff --git a/tests/integration/hosts/maya/lib.py b/tests/integration/hosts/maya/lib.py
index 1411ccca5f..e7480e25fa 100644
--- a/tests/integration/hosts/maya/lib.py
+++ b/tests/integration/hosts/maya/lib.py
@@ -44,6 +44,10 @@ class MayaHostFixtures(HostFixtures):
                                                    os.pathsep,
                                                    original_pythonpath))
 
+    @pytest.fixture(scope="module")
+    def skip_compare_folders(self):
+        yield []
+
 
 class MayaLocalPublishTestClass(MayaHostFixtures, PublishTest):
     """Testing class for local publishes."""
diff --git a/tests/integration/hosts/nuke/lib.py b/tests/integration/hosts/nuke/lib.py
index 564a5d3b88..8e97cd6fe4 100644
--- a/tests/integration/hosts/nuke/lib.py
+++ b/tests/integration/hosts/nuke/lib.py
@@ -56,6 +56,9 @@ class NukeHostFixtures(HostFixtures):
                                                    os.pathsep,
                                                    original_nuke_path))
 
+    @pytest.fixture(scope="module")
+    def skip_compare_folders(self):
+        yield []
 
 class NukeLocalPublishTestClass(NukeHostFixtures, PublishTest):
     """Testing class for local publishes."""
diff --git a/tests/integration/hosts/photoshop/lib.py b/tests/integration/hosts/photoshop/lib.py
index 16ef2d3ae6..23ae79434e 100644
--- a/tests/integration/hosts/photoshop/lib.py
+++ b/tests/integration/hosts/photoshop/lib.py
@@ -32,3 +32,7 @@ class PhotoshopTestClass(HostFixtures):
     def startup_scripts(self, monkeypatch_session, download_test_data):
         """Points Maya to userSetup file from input data"""
         pass
+
+    @pytest.fixture(scope="module")
+    def skip_compare_folders(self):
+        yield []
\ No newline at end of file
diff --git a/tests/lib/testing_classes.py b/tests/lib/testing_classes.py
index e4f816f4d0..8aaeb4304b 100644
--- a/tests/lib/testing_classes.py
+++ b/tests/lib/testing_classes.py
@@ -9,6 +9,7 @@ import shutil
 import glob
 import platform
 import requests
+import re
 
 from tests.lib.db_handler import DBHandler
 from common.openpype_common.distribution.file_handler import RemoteFileHandler
@@ -316,7 +317,8 @@ class PublishTest(ModuleUnitTest):
         yield True
 
     def test_folder_structure_same(self, dbcon, publish_finished,
-                                   download_test_data, output_folder_url):
+                                   download_test_data, output_folder_url,
+                                   skip_compare_folders):
         """Check if expected and published subfolders contain same files.
 
             Compares only presence, not size nor content!
@@ -334,9 +336,17 @@ class PublishTest(ModuleUnitTest):
                        glob.glob(expected_dir_base + "\\**", recursive=True)
                        if f != expected_dir_base and os.path.exists(f))
 
-        not_matched = expected.symmetric_difference(published)
-        assert not not_matched, "Missing {} files".format(
-            "\n".join(sorted(not_matched)))
+        filtered_published = set()
+        for pub_path in published:
+            for val in skip_compare_folders:
+                if not re.search(val, pub_path):
+                    filtered_published.add(pub_path)
+
+        not_matched = expected.symmetric_difference(filtered_published)
+        if not_matched:
+            self.failed = True
+            raise AssertionError("Missing {} files".format(
+                "\n".join(sorted(not_matched))))
 
 
 class DeadlinePublishTest(PublishTest):
@@ -419,3 +429,8 @@ class HostFixtures():
     def startup_scripts(self, monkeypatch_session, download_test_data):
         """"Adds init scripts (like userSetup) to expected location"""
         raise NotImplementedError
+
+    @pytest.fixture(scope="module")
+    def skip_compare_folders(self):
+        """Use list of regexs to filter out published folders from comparing"""
+        raise NotImplementedError